PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g007200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WOX
Protein Properties Length: 431aa    MW: 47226.8 Da    PI: 7.2958
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g007200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.51.7e-0647653957
                    S-HHHHHHHHHHHHHHHHC CS
        Homeobox 39 LterqVkvWFqNrRakekk 57
                    + +++V++WFqNr+ + k+
  Csa16g007200.1 47 VGDANVFYWFQNRKSRSKH 65
                    6789************995 PP

2Wus_type_Homeobox431.1e-1442664064
  Wus_type_Homeobox 40 eeyGkiedkNVfyWFQNrkaRerqk 64
                       +eyG+++d+NVfyWFQNrk+R+++k
     Csa16g007200.1 42 SEYGQVGDANVFYWFQNRKSRSKHK 66
                       69*********************99 PP

Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSEYGQVGDA NVFYWFQNRK  60
SRSKHKLRLL HNHSKHSLPQ SQPQPQPQQQ PLSSANSASS SSSSSSSSSK STKPRKNKNK  120
NNTNLSLGSS QMMGTMFPPE AAFLFPVSTV GGFEGITVSS QLGFLSGDMI EQQKPAPTMG  180
PCTGLLLSEI MNGSVSYGTH HQQHLSEKED EEIRMKMLQQ PQPQICYATT SQQITCYNNN  240
NNIMLHVPPT TSTTTTITTS HSLATVPSTS DQLQQPQPQI CYATTSQQIT CYNNNNNIML  300
HVPPTTSTTT TITTSHSLAT VPSTSDQLQV QAGARIRVFI NEMELEVTPG PFNVRDAFGE  360
EVVLINSAAG ARIRVFINEM ELEVTPGPFN VRDAFGEEVV LINSAGQPIV TDEYGVALQP  420
LQHGASYYLI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1185010.0AK118501.1 Arabidopsis thaliana At2g33880 mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL19-73-K21.
GenBankAY2514010.0AY251401.1 Arabidopsis thaliana WOX9 protein mRNA, complete cds.
GenBankBT0052960.0BT005296.1 Arabidopsis thaliana At2g33880 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankU787210.0U78721.3 Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473852.11e-174PREDICTED: WUSCHEL-related homeobox 9
SwissprotQ6X7J41e-149WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBLR0G0R01e-158R0G0R0_9BRAS; Uncharacterized protein (Fragment)
STRINGAl_scaffold_0004_18721e-151(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72062640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.17e-90homeobox-3